PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014642m
Common NameCICLE_v10014642mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 608aa    MW: 65905.8 Da    PI: 6.6575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014642mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30358416259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Ciclev10014642m 358 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 416
                      7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-33342418IPR003657WRKY domain
SuperFamilySSF1182901.44E-27350418IPR003657WRKY domain
PROSITE profilePS5081129.516352418IPR003657WRKY domain
SMARTSM007741.5E-36357417IPR003657WRKY domain
PfamPF031062.7E-26359416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDKGWGLTLD SDHPIVSNLN FFTSNKPKPS LARFRTNRDM AASGAADSAS VRMFQLPASD  60
NSNAPSSSDD NRVAVDEVDF FSDDKNRVSI SDHREDDRNK TTNSVHIKKE NSHDQLRHRT  120
GLDVNTGLHL LTAANTGSDQ STVDDGVSSD HADKKRTKIE LTQLQVELQQ MNTENQRLRD  180
MLSQVTNNYN ALQMHIVALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD QVMVPRQFIG  240
LGPSAETDHE VSNCSSDEER TLSGTPPNNV EAASKEHVNS NGKNEIVSFD DQAAAAAENS  300
NGKRIGREES PESETQGWGP NNKVQKLSSA KGIDQSNEAT MRKARVSVRA RSEAPMITDG  360
CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GNHNHPLPPA  420
AMAMASTTTA AASMLLSGSM SSADGIMNPN LLARAILPCS SSMATISASA PFPTVTLDLT  480
HSPNPLQLQR QAAQFQVQFP GQPQNLASVT NTQLPQVFGQ ALYNQSKFSG LQLSQNIGSN  540
SQSGSHQTLP PPLQQPQQLA DTVSAATAAI TADPNFTAAL AAAITSIIGG AQNPFSNNSN  600
NNNRQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22344420176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.33050.0fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449767.10.0hypothetical protein CICLE_v10014642mg
SwissprotQ9C5191e-164WRKY6_ARATH; WRKY transcription factor 6
SwissprotQ9XEC31e-164WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLV4UAG60.0V4UAG6_9R
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-137WRKY DNA-binding protein 31